RNA-Seq result handling

Clicking Next will allow you to specify the output options as shown in figure 30.10.

Image mrna_seq_step4
Figure 30.10: Selecting the output of the RNA-Seq analysis.

The main results of the RNA-Seq analysis are Expression Tracks. A track with a name ending with (GE) summarizes expression at the gene level. If the "Genome annotated with genes and transcripts" option was selected, a second track, with a name ending in (TE), is produced, which summarizes expression at the transcript level.

In addition, other results can be generated using the following options: