De Novo Assemble Long Reads
The De Novo Assemble Long Reads tool facilitates the generation of de novo assemblies from long reads. It is based on open source tools: Raven [Vaser and Šikic, 2021] for analysis of Oxford Nanopore reads and Pacific Biosciences CLR reads, and hifiasm [Cheng et al., 2021] for assembly of Pacific Biosciences HiFi reads.
Note that in order to create a de novo assembly, the tool requires a sufficient overlap between reads in the order of hundreds of bases.
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