Remove Homozygous Reference Variants

This tool removes orphan variants from a variant track. Homozygous variants are described as lacking a variant allele, i.e., a corresponding non-reference variant with exactly the same start and end positions.

To start the tool, go to:

        Toolbox | Resequencing Analysis (Image resequencing) | Variant Filtering (Image variant_filtering_folder_closed_16_h_p) | Remove Homozygous Reference Variants (Image remove_homozygous_ref_var_16_n_p)

In the first dialog, select the variant track from which you would like to remove the homozygous variants, and click Next to decide whether to Save or Open the resulting variant track.