Annotate with Exon Numbers

To run the Annotate with Exon Numbers tool, go to:

        Toolbox | Resequencing Analysis (Image resequencing) | Variant Annotation (Image variant_annotate_folder_closed_16_h_p) | Annotate with Exon Numbers (Image exon_numbering_16_n_p)

Given a track with mRNA annotations, a new track will be created in which variants are annotated with the numbering of the corresponding exon with numbered exons based on the transcript annotations in the input track (see an example of a result in figure 29.8).

Image exon_number_result
Figure 29.8: A variant found in the second exon out of three in total.

When there are multiple isoforms, a comma-separated list of the exon numbers is given.