Extracting reads from mappings

This section describes functionality for extracting reads from stand-alone read mappings. Extracting reads from reads tracks and sequence tracks is described in Extracting sequences from tracks.

Reads can be extracted from stand-alone read mappings in multiple ways:

Image reference_consensus_right_click_menu
Figure 22.17: Right-click on the selected region on the reference sequence (left) or consensus sequence (right) in a stand-alone read mapping for revealing the available options.

Image coverage_right_click_menu
Figure 22.18: Right-click on the coverage graph or reads for revealing the available options.