Per-region statistics

In addition to the summary report, you can see coverage statistics for each targeted region. This is reported as a track, and you can see the numbers by going to the table (Image table) view of the track. An example is shown in figure 29.9:

Image targeted_table
Figure 29.9: A track list containing the target region coverage track and reads track. The target region coverage track has been opened from the track list and is shown in table view. Detailed information on each region is displayed. Only one paired read maps to the region selected.

Image targeted_table_pairs_disconnected
Figure 29.10: The same data as shown in figure 29.9, but now the Show strands of paired reads option in the side-panel of the reads track has been ticked, so that the two reads in the paired read are shown.

In the shown figure, the coverage table is shown in split view with a track list. The coverage track has been opened from the track list by clicking once on the name found in the left side in the track list. When opening a read mapping in split view from a track list, the two views are linked, this means that when you click on an entry in the table, this position will be brought into focus in the track list.

For information about how to create a track list, please see track list.