Mapping table

When several reference sequences are used or you are performing de novo assembly with the reads mapped back to the contig sequences, all your mapping data will be accessible from a table (Image multicontig). It means that all the individual mappings are treated as one single file to be saved in the Navigation Area as a table.

An example of a mapping table for a de novo assembly is shown in figure 27.27.

Image contig_table_5_selected
Figure 27.27: The mapping table.

The information included in the table is:

At the bottom of the table there are three buttons that can be used to open or extract sequences. Select the relevant rows before clicking on the buttons:

You can export the table in Excel format.