View settings in the Side Panel

The View Settings panel for assemblies and read mappings with fewer than 2000 reads resembles that of alignments (see View alignments) but has some extra preferences described below (figure 18.14).

Image notcompact-view-assembly
Figure 18.14: An example of contig, result of an assembly with less than 2000 reads

There are many other viewing options available, both general and aimed as specific elements of a contig or a mapping, which can be adjusted in the View settings. Those covered here were the key ones relevant for standard review of the results.