Selecting sequences for evaluation

The evaluation is started from the Toolbox:

        Toolbox | Classical Sequence Analysis (Image gene_and_protein_analysis) | RNA Structure (Image rna_folder)| Evaluate Structure Hypothesis (Image hypothesis_testing)

This opens the dialog shown in figure 22.22.

Image hypothesis_testing_step1
Figure 22.22: Selecting RNA or DNA sequences for evaluating structure hypothesis.

If you have selected sequences before choosing the Toolbox action, they are now listed in the Selected Elements window of the dialog. Use the arrows to add or remove sequences or sequence lists from the selected elements. Note, that the selected sequences must contain a structure hypothesis in the form of manually added constraint annotations.

Click Next to adjust evaluation parameters (see figure 22.23).

Image hypothesis_testing_step2
Figure 22.23: Adjusting parameters for hypothesis evaluation.

The partition function algorithm includes a number of advanced options: