- Quality trimming based on quality scores
- Ambiguity trimming to trim off e.g. stretches of Ns
- Adapter trimming
- Base trim to remove a specified number of bases at either 3' or 5' end of the reads
- Length trimming to remove reads shorter or longer than a specified threshold
To start trimming:
Toolbox | NGS Core Tools () | Trim Sequences ()
This opens a dialog where you can add sequences or sequence lists. If you add several sequence lists, each list will be processed separately and you will get a a list of trimmed sequences for each input sequence list.
When the sequences are selected, click Next.