Pfam search parameters

Click Next if you wish to adjust how to handle the results. If not, click Finish. This will open a viewshowing the found domains as annotations on the original sequence (see figure 16.17). If you have selected several sequences, a corresponding number of views will be opened.

Image pfam_output
Figure 16.17: Domains annotations based on Pfam.

Each found domain will be represented as an annotation of the type Region. More information on each found domain is available through the tooltip, including detailed information on the identity score which is the basis for the prediction.

For a more detailed description of the provided scores through the tool tip look at