Calling pathways using the Identify Pathways tool requires a pathway database.
Such databases can be obtained using the Download Pathway Database tool. To run the Download Pathway Database tool go to
Toolbox | Microbial Genomics Module () | Functional Analysis () | Download Pathway Database ()
In the first step of the wizard a pathway database can be selected. Currently, the only available option is MetaCyc. Upon clicking "Next" the EULA for the selected database will appear, which needs to be accepted before proceeding to the download.