The Download Pathway Database tool allows you to download pathway databases for use with the Identify Pathways tool.
To run the tool, go to:
Toolbox | Microbial Genomics Module () | Functional Analysis () | Download Pathway Database ()
In the first wizard step, select the pathway database to download. Currently only one database is available:
- MetaCyc Pathway Database: A multi-organism database of pathways involved in primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The MetaCyc database consists of pathways included in the MetaCyc BioPAX Level 3 file (https://metacyc.org/).