The Download Protein Database allows you to download the following protein databases:
- Clusters of Orthologous Genes (COG)
- SwissPROT (with GO-term annotations)
- UniProt (UniRef50 complete with GO & EC annotations). Entries are annotated with Enzyme Commission (EC) numbers and GO-terms where available. Notice, that entries with GO-terms and no EC terms are not included.
- UniProt (UniRef90 subset with GO & EC annotations). This is the subset of entries containing Enzyme Commission (EC) numbers and GO terms. Notice, that entries with GO-terms and no EC terms are not included.
These protein databases can be used to create DIAMOND Indexes (see section Create DIAMOND Index), that may be used together with the Annotate CDS with Best DIAMOND Hit tool (see section Annotate CDS with Best DIAMOND Hit) and Annotate with DIAMOND tool (see section Annotate with DIAMOND).
Notice, that the SwissPROT and UniProt (UniRef50) protein reference databases have been annotated with GO associations from the EBI Gene Ontology Annotation (GOA) Database (https://www.ebi.ac.uk/GOA/index).
To run the tool, go to:
Toolbox | Microbial Genomics Module () | Databases () | Functional Analysis () | Download Protein Database ()