Taxonomic Profiling parameters

When sequences are selected, click Next, and you will see the dialog in (figure 5.7).

Select reference databases:

Image taxpro_2
Figure 5.7: Set the parameters for taxonomic profiling.

Curated reference databases and indexes are available with the Download Curated Microbial Reference Database tool (Download Curated Microbial Reference Database). Alternatively, you can use the Download Custom Microbial Reference Database tool (Download Custom Microbial Reference Database) to create your own custom reference database. To create indexes from reference databases and host genomes, use the Create Taxonomic Profiling Index tool (Create Taxonomic Profiling Index).

Under Set reads parameters, the following options are available: