- the GO database and of Pfam2GO mappings from the Gene Ontology Consortium (http://geneontology.org/).
- the Enzyme Commission number database from Expasy (https://enzyme.expasy.org/).
The GO database is used to convert Pfam annotation to GO terms by the Annotate CDS with Pfam Domains tool (see section Annotate CDS with Pfam Domains) and by the Build Functional Profile tool (see section "Build functional profile" ).
To run the tool, go to:
Toolbox | Microbial Genomics Module () | Databases () | Functional Analysis () | Download Ontology Database ()
If you select Create Report, the tool will also generate a summary report table. For each downloaded file, the table will contain the name of the downloaded file, its size, the URL from which is was downloaded, and the number of entries in the file.