Type with Consensus Refinement report
The Find Best References using Read Mapping report (figure 8.13) contains the following sections:
- Typing result. Short description of the type and subtype for the sample, if these attributes were present on the reference used.
- Summary. Read mapping statistics for the whole sample.
- Consensus. A table information per segment, including segment, type and subtype, original reference, and mapping quality statistics. If no good match was found for a certain segment, it will still appear in the report, but statistics will be empty or zero.
- Annotations. A table with information about the CDS annotations indicating potential problems, if CDS annotations were present on the reference used.
Figure 8.13: The report for Type with Consensus Refinement.