De Novo Assemble Small Genome parameters
To run the De Novo Assemble Small Genome tool, go to:
Tools | De Novo Sequencing (
) | De Novo Assemble Small Genome (
)
Select one or more sequence lists.
Click Next to set the assembly parameters (figure 3.1):
- Minimum contig length. The minimum length of contigs included in the output. Shorter contigs will be filtered.
- Keep circular contigs. When enabled, the minimum contig length filtering is not applied to circular contigs. This means that all circular contigs will be output regardless of length.
Figure 3.2: The De Novo Assemble Small Genome options.