Advanced RNA-Seq Tools

The tools from the Advanced RNA-Seq plugin have been moved into CLC Genomics Workbench and Biomedical Genomics Workbench in March 2017. They can be found in the new "RNA-Seq Analysis" section of the toolbox.

The new tools are:

The Advanced RNA-seq tools require RNA-Seq input data in the form of Expression Tracks, unlike the tools included in the "Microarray and Small RNA" folder that also support microarray data or Experiment objects.

In addition, the tools from the RNA-Seq folder automatically account for differences due to sequencing depth, removing the need to normalize input data.

Finally, the statistical analysis and visualization tools of the RNA-Seq folder make extensive use of the metadata system.