Non-exclusive Algorithms

Below is a list of algorithms which are non-exclusive, meaning that multiple jobs of these types can be run concurrently on a given node, be that a single server, job or grid node.

Algorithms marked as Streaming are I/O intensive and two streaming algorithms will not be run at the same time. When running on grid, Streaming algorithms are treated as exclusive, meaning that they will never run in conjunction with other algorithms (or themselves).

Algorithm Streaming  
Add attB Sites    
Amino Acid Changes X  
Annotate from Known Variants X  
Annotate with Conservation Scores X  
Annotate with Exon Numbers X  
Annotate with Flanking Sequences X  
Annotate with Nearby Gene Information    
Annotate with Overlap Information X  
Annotate with Repeat and Homopolymer Information    
Apply Peak Shape Filter    
Assemble Sequences    
Assemble Sequences to Reference    
Call Methylation Levels    
ChIP-Seq Analysis    
Convert DNA To RNA X  
Convert from Tracks X  
Convert RNA to DNA X  
Convert to Tracks X  
Copy Number Variant Detection (CNVs)    
Count-based statistical analysis    
Create Alignment    
Create BLAST Database    
Create Box Plot    
Create Entry Clone (BP)    
Create Expression Browser    
Create Expression Clone (LR)    
Create GC Content Graph Track    
Create Histogram    
Create K-medoids Clustering for RNA-Seq    
Create MA Plot    
Create Mapping Graph Track    
Create RRBS-fragment Track    
Create Sample Report    
Create Sequence Statistics    
Create Track from Experiment    
Create Track List    
Create Tree    
Create Venn Diagram for RNA-Seq    
Demultiplex Reads    
Download 3D Protein Structure Database X  
Download BLAST Databases X  
Download Pfam Database X  
Extract Annotations    
Extract Consensus Sequence    
Extract IsomiR Counts    
Extract Reads    
Extract Sequences X  
Fasta High-Throughput Sequencing Import X  
Filter against Known Variants X  
Filter Annotations on Name X  
Filter Based on Overlap X  
Find and Model Structure X  
Find Binding Sites and Create Fragments    
Find Open Reading Frames    
Gaussian Statistical Analysis    
Gene Set Test    
GO Enrichment Analysis    
Hierarchical Clustering of Samples    
Identify Enriched Variants in Case vs Control Samples X  
Identify Graph Threshold Areas    
Identify Known Mutations from Mappings    
Illumina High-Throughput Sequencing Import X  
Import Primer Pairs    
Import SAM/BAM Mapping Files X  
Import Tracks from File    
InDels and Structural Variants    
Ion Torrent High-Throughput Sequencing Import X  
Learn Peak Shape Filter    
Link Variants to 3D Protein Structure X  
Merge Annotation Tracks X  
Merge Overlapping Pairs    
Merge Read Mappings X  
Merge Variant Tracks    
Motif Search    
PacBio High-Throughput Sequencing Import X  
Pfam Domain Search X  
Predict Splice Site Effect    
Principal Component Analysis    
Probabilistic Variant Detection    
Proportion-based Statistical Analysis    
Quality-based Variant Detection    
Quantify miRNA    
QC for Read Mapping    
QC for Sequencing Reads X  
QC for Targeted Sequencing    
Remove Duplicate Mapped Reads    
Remove Homozygous Reference Variants    
Remove Information from Variants X  
Remove Marginal Variants X  
Remove Variants Present in Control Reads X  
Rename Sequences in Lists    
Reverse Complement Sequence    
Subsample Sequence List    
Sanger High-Throughput Sequencing Import X  
Secondary Peak Calling    
Score Regions    
Split Sequence List    
Transcription Factor ChIP-Seq    
Translate to Protein    
Trim Sequences    
TRIO analysis    
Update Sequence Attributes in Lists    
Whole Genome Coverage Analysis