Importing the configuration file provided as an example, and following the instructions in this section, leads to three tools being made available to users logged into the CLC Server via their Workbench or the Command Line Tools: CLC bio Bowtie Build Index, CLC bio Bowtie List Indices and CLC bio Bowtie Map.
- Installing Bowtie
- Understanding the Bowtie Map configuration
- Setting the path for temporary data
- Tools for building index files