Specifying RNA-Seq outputs

Clicking Next will allow you to specify the output options as shown in figure 28.9.

Image mrna_seq_step4
Figure 28.9: Selecting the output of the RNA-Seq analysis.

The main results of the RNA-Seq analysis are two expression tracks (one for gene-level and one for transcript-level expression) and a mapping track. In addition, the following optional results can be selected: