- Annotate Variants (WTS)
- Compare Variants in DNA and RNA
- Identify Candidate Variants and Genes from Tumor Normal Pair
- Identify and Annotate Differentially Expressed Genes and Pathways
- Identify Variants and Add Expression Values
The ready-to-use workflows can be found in the toolbox under Whole Transcriptome Sequencing as shown in figure 16.1.
Note! Often you will have to prepare data with one of the two Preparing Raw Data workflows described in Preparing Raw Data before you proceed to the analysis of the sequencing data RNA-Seq.