Automatic analysis of RNA-seq data

The CLC Cancer Research Workbench offers a range of different tools for RNA-seq analysis. Currently four different ready-to-use workflows are available for analysis of RNA-seq data:

The ready-to-use workflows can be found in the toolbox under Whole Transcriptome Sequencing as shown in figure 16.1.

Image rnaseq_ready_to_use_workflows
Figure 16.1: The RNA-seq ready-to-use workflows.

Note! Often you will have to prepare data with one of the two Preparing Raw Data workflows described in Preparing Raw Data before you proceed to the analysis of the sequencing data RNA-Seq.