Resequencing analysis tools
Subsections
- Identify Known Mutations from Sample Mappings
- Trim primers of mapped reads
- Extract reads based on overlap
- Map Reads to Reference
- Mapping output options
- Color space
- Mapping result
- Local realignment
- Merge mapping results
- Remove duplicate mapped reads
- Coverage analysis
- Variant Detectors - overview
- Basic Variant Detection
- Fixed Ploidy Variant Detection
- Low Frequency Variant Detection
- Variant Detectors - error model estimation
- Variant Detectors - filters
- Variant Detectors - the outputs
- The Fixed Ploidy and Low Frequency variant callers: detailed descriptions
- InDels and Structural Variants
- Variant data
- Detailed information about overlapping paired reads