Output from the Differential Expression Analysis workflows
The following outputs are generated:
- Expression browser (
): A browser for inspecting feature expressions, annotations, and statistics for many samples. See Create Expression Browser.
- Feature level heat map for RNA-Seq (
): A heat map of expression values. Each column corresponds to one sample, and each row corresponds to a feature (a gene or a transcript). See Create Feature Level Heat Map for RNA-Seq.
- Gene set test (
): One or more tables containing the GO enrichment analysis results. See Gene Set Test for details.
- PCA for RNA-Seq (
): A Principal Component Analysis (PCA) plot. See PCA for RNA-Seq for details.
- Sample level heat map for RNA-Seq (): A heat map of sample distances. See Create Sample Level Heat Map for RNA-Seq.
- Statistical comparison track/table (
)/ (
): One or more comparisons containing the differential expression results. See Output of the Differential Expression tools for details.
- Venn diagram (
): A plot comparing the overlap of differentially expressed features in two or more statistical comparisons. See Create Venn Diagram for RNA-Seq for details.
- Additionally, if "RNA" is selected as biotype in "Specify workflow path" or if running the "Differential Expression Analysis from Count Matrix" workflow:
- Genome browser view (
): Collection of output tracks, allowing multiple data types at the same genomic position to be viewed simultaneously. Note that not all output tracks are necessarily in the browser. Tracks can be added and removed from the browser.
- Genome browser view (
- Additionally, if running the "Differential Expression Analysis from Count Matrix" workflow:
- Expression Tracks (
): The imported expression tracks.
- Expression Tracks (