Output from Calculate HRD Score
The output report (
) has the following sections
- Summary. Contains:
- HRD status. HRD-positive or HRD-negative.
- HRD score. The HRD score.
- LOH score. Number of detected LOH regions.
- LST score. Number of detected LST events.
- TAI score. Number of detected TAI regions.
- Genomic coverage (%). Percentage of genomic positions covered by the input regions relative to the length of the genome.
- LOH regions. Contains information about the LOH regions:
- Chromosome. Chromosome.
- Region. Start and end positions in Mb (megabases).
- Length. The region length in Mb (megabases).
- Ploidy state. Ploidy state of the region, see table 10.1 for possible ploidy states.
- LST events. Contains information about the LST events:
- Chromosome arm. Chromosome and arm (p: shorter arm, q: longer arm).
- From/To region. Start and end positions of the region before/after the event, in Mb (megabases).
- From/To ploidy state. The ploidy state of the region before/after the event, according to table 10.1.
- TAI regions. Contains information about the TAI regions:
- Chromosome arm. Chromosome and arm (p: shorter arm, q: longer arm).
- Region. Start and end positions in Mb (megabases).
- Prevalent copy number. Most frequent copy number on the chromosome.
- Ploidy state. Ploidy state of the region, see table 10.1 for possible ploidy states.