Output from the Analyze Tumor Normal Pair workflow
The following outputs are generated:
- Combined report (
). A report comparing different statistics for the tumor and normal samples. See Combine Reports output for details.
- Genome browser view (
): Collection of output tracks, allowing multiple data types at the same genomic position to be viewed simultaneously. Note that not all output tracks are necessarily in the browser. Tracks can be added and removed from the browser.
- Germline variants (
). Tumor variants that are also detected in the matched normal sample.
- Somatic variants (). Tumor variants that are not detected in the matched normal sample.
- QC & Reports folder:
- Coverage report tumor/normal (
), if read mappings and target regions are provided.
Summarizes coverage statistics in target regions. See Coverage summary report for details.
- Germline variants report (). Quantifies the number and type of germline variants. See Create Variant Track Statistics Report for details.
- QC read mapping report tumor/normal (), if read mappings are provided. Summarizes different statistics for the read mappings. See QC for Read Mapping for details.
- Sample report tumor/normal (
).
Summarizes the reports for the tumor and normal samples, respectively. See Create Sample Report output for details.
- Somatic variants report (). Quantifies the number and type of somatic variants. See Create Variant Track Statistics Report for details.
- Coverage report tumor/normal (
- Tracks folder:
- Compared target regions coverage (
), if read mappings and target regions are provided. Tumor-normal compared coverage statistics for each target region. See Target Region Coverage Analysis for details.
- Low coverage in tumor/normal (), if read mappings and target regions are provided. Regions where the tumor/normal coverage is less than or equal to the upper coverage threshold defined when running the workflow. See Per-region statistics for details.
- Compared target regions coverage (