Rarefaction for Clonotype Sample Comparison

The rarefaction curve (Image rarefaction_plot_16_n_p) is also known as the species accumulation curve (figure 7.22). It shows the expected number of distinct clonotypes discovered as a function of the total number of detected clonotypes. The curve is extrapolated to twice the total number of detected clonotypes for the most abundant input.

Image compare_immune_rarefaction
Figure 7.28: Rarefaction plot for the TRA. The samples and chain can be changed from the side panel.