Rarefaction for Clonotype Sample Comparison
The rarefaction curve (
) is also known as the species accumulation curve (figure 7.19
It shows the expected number of distinct clonotypes discovered as a function of the total number of detected clonotypes.
The curve is extrapolated to twice the total number of detected clonotypes for the most abundant input.
Figure 7.25: Rarefaction plot for the TRA. The samples and chain can be changed from the side panel.