Output from the Immune Repertoire Analysis tool

Immune Repertoire Analysis produces a TCR clonotypes (Image tcr_table_16_n_p) or BCR clonotypes (Image bcr_table_16_n_p) element, containing the identified clonotypes, see Clonotypes for more details.

The tool optionally outputs a T cell receptor (TCR) or B cell receptor (BCR) report (Image proteinreport) summarizing statistics of the detected clonotypes. The report includes the following information:

The identification of the segments is performed in the following order:

Therefore, the reported number of fragments for which a J / D / C segment was identified is bounded by the number of fragments from a previous identification step.

The remaining information in the report is given per chain type and only for those chain types for which clonotypes have been identified.

Note. All plots can be opened in table view by double-clicking on the plot and clicking on the table icon in the lower left corner.