Rarefaction for Clonotypes

The rarefaction curve (Image rarefaction_plot_16_n_p) is also known as the species accumulation curve (figure 7.22). It shows the expected number of distinct clonotypes discovered as a function of the total number of detected clonotypes, together with the confidence interval (CI), obtained from a normal approximation. The curve is

Image immune_rarefaction
Figure 7.22: Rarefaction plot for the TRA chain. The chain can be changed from the side panel.