Output from the Perform QIAseq Targeted TCR Analysis workflow
The following outputs are generated:
- Clonotypes (): The TCR clonotypes, after merging and filtering, identified in the sample. See Clonotypes for details.
- Sample report (): A report containing essential information from all reports produced by the workflow. See https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Create_Sample_Report.html for details.
- QC & Reports folder:
- Remove and annotate with UMI report (): summarizes the identified UMIs. See Remove and Annotate with Unique Molecular Index for details.
- Trim common sequence report (): summarizes trimming of the common sequence. See https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Trim_output.html for details.
- UMI read report (): summarizes the identified UMI groups. See Create UMI Reads from Reads for details.
- Merge overlaps report (): summarizes how overlapping paired reads have been merged. See https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Merge_Overlapping_Pairs.html for details.
- Trim merged and not merged reads reports (): summarize the performed trimming. See https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Trim_output.html for details.
- Immune repertoire analysis report (): summarizes all detected clonotypes. See Output from the Immune Repertoire Analysis tool for details.
- Merge immune repertoire report (): summarizes merging of clonotypes. See Output from the Merge Immune Repertoire tool for details.
- Filter immune repertoire report (): summarizes clonotypes filtering. See Filter Immune Repertoire for details.
- Supplemental folder:
- Trimmed UMI merged and not merged reads (): The processed reads that were used for the clonotype identification.
- Raw clonotypes (): TCR clonotypes, before merging and filtering, identified in the sample. See Clonotypes for details.