Sample specific outputs

A separate folder of results is created for each sample and contains sample specific reports, tracks and additional supplemental outputs, (figure 16.7).

Image sarscov2wfoutputonesample
Figure 16.7: The per sample outputs generated by the SARS-CoV-2 Low Frequency and Shared Variants workflow


The following reports are produced:


The following tracks are produced:

Genome View

The Genome View track list contains the following collection of tracks:

An example is shown in figure 16.8.

Image sarscov2genomeonesampleview
Figure 16.8: An example of the Genome View track list created for each sample


The following results are placed in a folder called Supplemental: