Output from Analyze QIAseq Somatic WGS
The following outputs are generated:
- Genome browser view (
): Collection of output tracks, allowing multiple data types at the same genomic position to be viewed simultaneously. Note that not all output tracks are necessarily in the browser. Tracks can be added and removed from the browser.
- Sample report (
): Sample report containing essential information from all reports produced by the workflow.
- Variants (
): Detected variants.
- Additionally, if preparing for QCI Interpret:
- QCI Interpret report (): Report prepared for uploading to QCI Interpret and QCI Interpret Translational.
- QCI Interpret report (
- QC & Reports folder:
- Coverage report (
): Summarizes the coverage.
- Mapping report (): Summarizes the performed read mapping.
- QC report (): Summarizes and visualizes various statistics of the input reads.
- Remove ligation artifacts report (): Summarizes ligation artifacts found in and removed from the read mapping.
- Structural variants report (): Summarizes the number and different types of identified structural variants.
- Trim reads report (): Summarizes the performed read trimming
- Coverage report (
- Tracks folder:
- Amino acid changes (
): Amino acid changes introduced by the detected variants.
- Indels indirect evidence (): Filtered indels.
- Read mapping (
): Reads mapped to the reference genome.
- Amino acid changes (