Output from Analyze QIAseq Hybrid Capture DNA in Trio
The following outputs are generated:
- Genome browser view (
): Collection of output tracks, allowing multiple data types at the same genomic position to be viewed simultaneously. Note that not all output tracks are necessarily in the browser. Tracks can be added and removed from the browser.
- Putative causal variants proband (
): Detected putative variants in the proband after removal of variants from the unaffected parent.
- Sample report (
): Sample report containing essential information from all reports produced by the workflow.
- QC & Reports folder:
- For each family member (proband, affected parent, and unaffected parent):
- Coverage report (
): Summarizes coverage statistics in target regions.
- Duplicates report (
): Contains information about removal of duplicate mapped reads
- Mapping report (): Summarizes the performed read mapping.
- Coverage report (
- For each family member (proband, affected parent, and unaffected parent):
- Tracks folder:
- Amino acid changes (
): Amino acid changes introduced by putative causal variants in the proband.
- Gene list with putative causal variants proband (
): Genes affected by putative variants in the proband.
- Variants in affected parent (): Variants detected in the affected parent.
- Variants in proband (): Variants detected in the proband.
- For each family member (proband, affected parent, and unaffected parent):
- Per-region statistics track (): Coverage statistics for each target region.
- Read mapping (
): Reads mapped to the reference genome.
- Per-region statistics track (
- Amino acid changes (