Output from the Analyze QIAseq Targeted TCR (Illumina) workflow
The following outputs are generated:
- Clonotypes (
): The TCR clonotypes, after merging and filtering, identified in the sample.
See Clonotypes for details.
- Sample report (
): Sample report containing essential information from all reports produced by the workflow.
- QC & Reports folder:
- Filter immune repertoire report (
): Summarizes clonotypes filtering.
See Filter Immune Repertoire for details.
- Immune repertoire analysis report (): Summarizes all detected clonotypes.
See Output from the Immune Repertoire Analysis tool for details.
- Merge immune repertoire report (): Summarizes clonotypes merging.
See Output from the Merge Immune Repertoire tool for details.
- Merge overlaps report (): Summarizes how overlapping paired reads have been merged.
See Merge Overlapping Pairs for details.
- Remove and annotate UMI report (): Summarizes the identified UMIs.
- Trim common sequence report (): Summarizes trimming of the common sequence.
See Trim output for details.
- Trim merged reads and Trim not merged reads reports (): Summarize the performed trimming.
See Trim output for details.
- UMI reads report (): Summarizes the UMI reads.
- Filter immune repertoire report (
- Supplemental folder:
- Raw clonotypes (): TCR clonotypes, before merging and filtering, identified in the sample.
See Clonotypes for details.
- Trimmed UMI merged reads and Trimmed UMI not merged reads (
): The processed reads that were used for the clonotype identification.
- Raw clonotypes (