show the secondary view of an already open sequence, click the
Show Secondary Structure 2D
View () button at the bottom of the
Graphical view and editing of secondary
If the sequence is not open, click Show () and select Secondary Structure 2D View ().
This will open a view similar to the one shown in figure 22.9.
Figure 22.9: The secondary structure view of an RNA sequence zoomed in.
Like the normal sequence view, you can use Zoom in () and Zoom out (). Zooming in will reveal the residues of the structure as shown in figure 22.9. For large structures, zooming out will give you an overview of the whole structure.