Running the Coverage analysis tool

To run the Coverage analysis tool:

        Toolbox | Resequencing Analysis (Image resequencing) | Coverage Analysis (Image copy_number_variation_16_n_p)

This opens the dialog shown in figure 25.40.

Image coverageanalysis_step2
Figure 25.40: Select read mapping results.

Select a reads track or read mapping and click Next. This opens the dialog shown in figure 25.41.

Image coverageanalysis_step3
Figure 25.41: Specify the p-value cutoff.

Set the p-value and minimum length cutoff.

Click Next and specify the result handling (figure 25.42).

Image coverageanalysis_step4
Figure 25.42: Specify the output.

Open or save and click Finish.

An example of a track output of the Coverage analysis tool is shown in figure 25.43.

Image CoverageAnalysisOutput_track
Figure 25.43: An example of a track output of the Coverage analysis tool.