If the analysis is performed on
several sequences at a time the method will search for patterns in
the sequences and open a new view for each of the sequences, in
which a pattern was discovered. Each novel pattern will be
represented as an annotation of the type Region. More
information on each found pattern is available through the tool-tip,
including detailed information on the position of the pattern and
Pattern search output
It is also possible to get a tabular view of all found patterns in one combined table. Then each found pattern will be represented with various information on obtained scores, quality of the pattern and position in the sequence.
A table view of emission values of the actual used HMM model is presented in a table view. This model can be saved and used to search for a similar pattern in new or unknown sequences.