RNA-Seq result handling

Clicking Next will allow you to specify the output options as shown in figure 30.10.

Image mrna_seq_step4
Figure 30.10: Selecting the output of the RNA-Seq analysis.

The main results of the RNA-Seq analysis are Expression Tracks. One track (whose name ends with (GE)) summarizes expression at the gene level. If the "Genome annotated with genes and transcripts" option was selected, a second track summarizing expression at the transcript level is also produced. This track has a name ending with (TE).

In addition, the following optional results can be selected: