This section focuses on analysing expression data from sources such as microarrays using tools found under the Microarray Analysis () folder of the Toolbox. This includes tools for performing quality control of the data, transformation and normalization, statistical analysis to measure differential expression and annotation-based tests. A number of visualization tools such as volcano plots, MA plots, scatter plots, box plots, and heat maps are also available to aid interpretation of the results.
- Experimental design
- Transformation and normalization
- Quality control
- Feature clustering
- Statistical analysis - identifying differential expression
- Annotation tests
- General plots