Output settings

Click Next and you are presented with the dialog shown in figure 30.9. The parameter is enabled when using paired data.

Image mrna_seq_step3b
Figure 30.9: Fusion genetable settings.

The Minimum read count fusion gene table parameter ensures that only combinations of genes supported by at least this number of read pairs are included. The default value is 5, which means that at least 5 pairs need to connect two genes in order to report it in the result (see Gene fusion reporting).