Running the Coverage analysis tool

To run the Coverage analysis tool:

        Toolbox | Resequencing Analysis (Image resequencing) | Coverage Analysis (Image copyNumberVariation_16_n_p)

This opens the dialog shown in figure 25.36.

Image coverageanalysis_step2
Figure 25.36: Select read mapping results.

Select a reads track or read mapping and click Next. This opens the dialog shown in figure 25.37.

Image coverageanalysis_step3
Figure 25.37: Specify the p-value cutoff.

Set the p-value and minimum length cutoff.

Click Next and specify the result handling (figure 25.38).

Image coverageanalysis_step4
Figure 25.38: Specify the output.

Open or save and click Finish.

An example of a track output of the Coverage analysis tool is shown in figure 25.39.

Image CoverageAnalysisOutput_track
Figure 25.39: An example of a track output of the Coverage analysis tool.