In the toolbox, the folder Compare Variants
contains tools that can be used to compare experimental variants. The two tools Compare Sample Variant Tracks
and Compare Variants within Group
are similar to the Filter against Known Variants
found in the Annotate and Filter Variants
folder. The main difference is how the tools are used. The Filter against Known Variants
should be used when comparing experimental variants with variant databases, and the other tools when comparing experimental variants with other experimental variants.