InDels and Structural Variation

The InDels and Structural Variants tool is designed to identify structural variants such as insertions, deletions, inversions, translocations and tandem duplications in read mappings. It relies exclusively on information derived from unaligned ends (also called 'soft clippings') of the reads in the mappings. This means that:

In it's current version the InDels and Structural Variants tool has the following known limitations:



Subsections