Symbolic representation in sequence view

In the Side Panel of normal sequence views (Image sequence), you will find an extra group under Nucleotide info called Secondary Structure. This is used to display a symbolic representation of the secondary structure along the sequence (see figure 21.19).

Image secondarystructuresymbolszoomedin
Figure 21.19: The secondary structure visualized below the sequence and with annotations shown above.

The following options can be set:

When you zoom in and out, the appearance of the symbols change. In figure 21.19, the view is zoomed in. In figure 21.20 you see the same sequence zoomed out to fit the width of the sequence.

Image secondarystructuresymbolszoomedout
Figure 21.20: The secondary structure visualized below the sequence and with annotations shown above. The view is zoomed out to fit the width of the sequence.