Maximum Likelihood Phylogeny

To generate a maximum likelihood based phylogenetic tree:

        Toolbox | Classical Sequence Analysis (Image gene_and_protein_analysis) | Alignments and Trees (Image alignmentsandtrees)| Maximum Likelihood Phylogeny (Image ml_tree)

Image ml_tree_step2_v2
Figure 20.7: Select the alingment for tree construction.

Image ml_tree_step3
Figure 20.8: Adjusting parameters for maximum likelihood phylogeny

The following parameters can be set for the maximum likelihood based phylogenetic tree (see figure 20.8):

In the next step of the wizard it is possible to perform bootstrapping (figure 20.9).

Image ml_tree_step4
Figure 20.9: Adjusting parameters for ML phylogeny