Output from Immune Repertoire and Expression Analysis from Reads (10xV(D)J)

The workflow creates several output elements stored in a specific folder structure as indicated in figure 19.25. The reports are valuable for assessing whether the appropriate parameters have been used.

Image immune-rna-from-fastq-output
Figure 19.25: The Results folder contains the output elements produced by the Immune Repertoire and Expression Analysis from Reads (10xV(D)J) workflow when running using the sequence lists in the Input folder. The Reports and Supplemental folders contain a subfolder for each of the batch units defined during execution. Here, the metadata from figure 19.21 was used. Root elements originate from the combined analysis of all inputs.