Add Information to Plot
Add Information to Plot can be found in the Toolbox here:
Toolbox | Single Cell Analysis (
) | Utility Tools (
) | Add Information to Plot (
)
The tool takes as input a plot of one of the following types:
- Dimensionality Reduction Plot (
), see Dimensionality reduction.
- Phase Portrait Plot (
), see Create Phase Portrait Plot.
- Spatial Transcriptomics Plot (
), see The Spatial Transcriptomics Plot element.
The information to be added to the plot is set in the Information option. Multiple elements can be chosen, at most one of the following types:
- Cell Clusters (
);
- Cell Annotations (
);
- Expression Matrix (
) or Expression Matrix with spliced and unspliced counts (
);
- Peak Count Matrix (
);
- Velocity Matrix (
);
- Only when the input is a Spatial Transcriptomics Plot: Dimensionality Reduction Plot ().
Add Information to Plot produces a copy of the input plot, with associations to the selected elements, such that they are available in the Side Panel. Note that dimensionality reduction and phase portrait plots are already associated with the matrices that were used to produce the plots.
The tool is intended for use in workflows, so that the association of the various elements can be automated. Outside of a workflow setting, it is usually easier to achieve the same result by dragging the elements from the Navigation Area into the Side Panel, see Single cell low-dimensional plots functionality for details.