Output from Immune Repertoire and Expression Analysis from Clonotypes and Matrix
The workflow creates several output elements stored in a specific folder structure as indicated in figure 20.3. The reports are valuable for assessing whether the appropriate parameters have been used.
Figure 20.3: The Results folder contains the output elements produced by the Immune Repertoire and Expression Analysis from Clonotypes and Matrix workflow when run using the Expression Matrices and Cell Clonotypes in the Input folder. The Reports folder contains a subfolder for each of the batch units defined during execution. Here, the "Use organization of input data" was used. Note that Matrix-S2 contained two samples and so two QC reports are produced. Root elements originate from the combined analysis of all inputs.