Surfaces

(Image projecttree_surface_16_n_p)

Molecular surfaces can be visualized.

Five color schemes are available for surfaces:

A surface spanning multiple molecules can be visualized by creating a custom atom group that includes all atoms from the molecules (see Create atom group)

It is possible to adjust the opacity of a surface by adjusting the transparency slider at the bottom of the menu.

Image transparentsurfaces
Figure 13.9: Transparent surfaces

Notice that visual artifacts may appear when rotating a transparent surface. These artifacts disappear as soon as the mouse is released.