Remove Reference Variants
The variant tracks produced by the variant detection tools of CLC Genomics Workbench include reference alleles complementing a non-reference allele (i.e. a heterozygous variant where only one allele is different from the reference). In some situations, this information is not necessary, and these reference allele variants can be filtered away
Toolbox | Resequencing Analysis | Variant Filtering | Remove Reference Variants
This opens a dialog where you can select a variant track (
) that should be filtered.
Clicking Next and Finish to create a new track without the reference variants.